ArTEdb

Tools and Resource used in TE annotation

• Homology based:
  • RepeatMasker
• De novo Identification:
  • RepeatModeler
  • LTR_Finder
  • LTRHarvest
  • LTRdigest
  • MITE-Hunter
• TE classification:
  • PASTEClassifier
  • TEClass
• Databases
  • Repbase
  • GypsyDB
  • BmTEdb